PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G263400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 28396.6 Da PI: 6.3468 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.2e-17 | 88 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Sevir.1G263400.2.p 88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137 59****999.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-21 | 88 | 146 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.813 | 88 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 88 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-37 | 88 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 89 | 100 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.23E-29 | 89 | 147 | No hit | No description |
Pfam | PF00847 | 1.7E-11 | 89 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-10 | 111 | 127 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MEGDAIHAPT TSSSSSSSSD SGAGSCVING AQELPSKNGK PRKHMMKRKR AASPAAPDGR 60 GAPEAAAVDE RGDGGRRKRG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFPT 120 AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPASASPA DIQAAAAEAA AAAAVDVEQC 180 VSSHAAAETS SSSSAASLEK AFAGHSEENV LFDLPDLLLD LSNGLCWSPI WAAAPAAAEE 240 YDGGDSLHEP LLWADDDQCW IMDAAAPVQP D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 74 | 146 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G263400.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660731.1 | 1e-116 | ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 8e-51 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | K3YUP9 | 1e-133 | K3YUP9_SETIT; Uncharacterized protein | ||||
STRING | Si017995m | 1e-134 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G263400.2.p |
Publications ? help Back to Top | |||
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