PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G263400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 308aa    MW: 31686.2 Da    PI: 5.9939
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G263400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1788137255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sevir.1G263400.1.p  88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137
                         58****999.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3188146IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2088146IPR016177DNA-binding domain
PROSITE profilePS5103222.81388145IPR001471AP2/ERF domain
SMARTSM003806.7E-3788151IPR001471AP2/ERF domain
PRINTSPR003678.1E-1089100IPR001471AP2/ERF domain
PfamPF008472.0E-1189137IPR001471AP2/ERF domain
CDDcd000181.22E-2989147No hitNo description
PRINTSPR003678.1E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGDAIHAPT TSSSSSSSSD SGAGSCVING AQELPSKNGK PRKHMMKRKR AASPAAPDGR  60
GAPEAAAVDE RGDGGRRKRG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFPT  120
AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPASASPA DIQAAAAEAA AAAAVDVEQC  180
VSSHAAAETS SSSSAASLEK VAVAAKAAAA TDVEQCVSSP AAVTSSSPSS AASSVEAFAG  240
HSEENVLFDL PDLLLDLSNG LCWSPIWAAA PAAAEEYDGG DSLHEPLLWA DDDQCWIMDA  300
AAPVQPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1874146473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G263400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278191e-125KJ727819.1 Zea mays clone pUT5771 AP2-EREBP transcription factor (EREB30) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660731.11e-116ethylene-responsive transcription factor ERF034
TrEMBLA0A368PPE21e-139A0A368PPE2_SETIT; Uncharacterized protein
STRINGSi017995m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-38ERF family protein