PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G261900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 325aa    MW: 34191.2 Da    PI: 6.5171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G261900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20145196256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  Sevir.1G261900.1.p 145 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 196
                         8********.***********8876..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32144204IPR001471AP2/ERF domain
CDDcd000187.17E-31145204No hitNo description
PfamPF008471.5E-14145195IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22145204IPR016177DNA-binding domain
SMARTSM003808.5E-38145209IPR001471AP2/ERF domain
PROSITE profilePS5103224.25145203IPR001471AP2/ERF domain
PRINTSPR003671.9E-13146157IPR001471AP2/ERF domain
PRINTSPR003671.9E-13185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDYSGELDDF SLQLIREQLL GGEALACLPV GPDAAAAYSA SSVHPAAQAA FHHQPAAFVP  60
HQHQQQAAYV DLTNEYADAA AAAAVVEAAA FRAEPVMIRF GGEPSPVSDP SRRPLLTISL  120
PPTSHAWGGP AAAPAQALDA NDFRKYRGVR QRPWGKFAAE IRDPKKRGSR VWLGTYDTAI  180
EAARAYDRAA FRMRGAKAIL NFPNEVGSRG ADFLAPPPPQ ASQNKRKLQH DAAGAEPAAK  240
SVKAEAFGSP ASSSLTSSLS PATTTASTVT ATSSSPSSEA GATEMFPFPM TPSSWTWEQL  300
EGVFGSLSPL SPHPQLGFPE VTVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28144208468ATERF1
3gcc_A7e-28144208468ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G261900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953326.10.0ethylene-responsive transcription factor ERF105
TrEMBLK3YU440.0K3YU44_SETIT; Uncharacterized protein
STRINGSi017790m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-24ethylene responsive element binding factor 5