PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G261500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 295aa    MW: 30580.2 Da    PI: 6.3676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G261500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.4e-19142192255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++ ae+Aa a+++a+ +++g
  Sevir.1G261500.1.p 142 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDNAEDAAVAYDRAAYRMRG 192
                         8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.74E-27141200No hitNo description
Gene3DG3DSA:3.30.730.103.6E-31141200IPR001471AP2/ERF domain
PROSITE profilePS5103223.749142200IPR001471AP2/ERF domain
SMARTSM003801.1E-36142206IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23142202IPR016177DNA-binding domain
PfamPF008474.4E-12142192IPR001471AP2/ERF domain
PRINTSPR003675.8E-13143154IPR001471AP2/ERF domain
PRINTSPR003675.8E-13182202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLLNPACEAA ALDSIRHHLL DEPAAAAARP VYRRSTSFGS LVADQWSESL PFRPDDADDM  60
VVFGALRDAF SRGWLPDGSF AAVKPEPPAS PDSPYEFGSC LGVGGLLASH EEEPETPTAG  120
AASPATAPGS SEEAAAVARG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTYDNAEDAA  180
VAYDRAAYRM RGSRALLNFP LRIGSEIAAA AAAAATATAV GEKRPSPEPA ASSDSSSPSS  240
SSSSGTPKRR KRGEAAAATM AMALVPPPPA QAPVQLTLPA HPWFAAGPVQ QLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-38138205168ATERF1
3gcc_A3e-38138205168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G261500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277140.0KJ727714.1 Zea mays clone pUT5653 AP2-EREBP transcription factor (EREB195) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953322.11e-169ethylene-responsive transcription factor 2
SwissprotQ404792e-54ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLK3YUJ51e-168K3YUJ5_SETIT; Uncharacterized protein
STRINGSi017941m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-37ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]