PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G244100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 290aa    MW: 31568 Da    PI: 6.4239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G244100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.5e-52101351128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+deelv++yL kkv+++++    ++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd+e
  Sevir.1G244100.1.p  10 LPPGFRFYPSDEELVCHYLLKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTAREWYFFSFRDRKYATGSRTNRATRSGYWKATGKDRE 99 
                         79*************************998.88***************87788899*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v s +g++vg++ktLvfy+grap+g+k+ Wvmhe+rl
  Sevir.1G244100.1.p 100 VRS-GGAVVGMRKTLVFYRGRAPNGVKSGWVMHEFRL 135
                         ***.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-627154IPR003441NAC domain
PROSITE profilePS5100558.97310154IPR003441NAC domain
PfamPF023652.6E-2811135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MALREIESTL PPGFRFYPSD EELVCHYLLK KVANERIAQG TLVEVDLHAR EPWELPEVAK  60
LTAREWYFFS FRDRKYATGS RTNRATRSGY WKATGKDREV RSGGAVVGMR KTLVFYRGRA  120
PNGVKSGWVM HEFRLDTPHS PPREDWVLCR VFQKTRGDGD GQDGDSSSSP PAFAGSSSRV  180
MTESDHYSAS GGYCYYGHTA LAPQQEAVAV LPQYYYGGGG TAADHHHGFQ RDDAGGAGAL  240
PGFGFGAREV VAGGDEYGFA AGYFDMGGGF EDVASLGVGG GMEFPQAWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52515410168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G244100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381220.0BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953145.10.0NAC domain-containing protein 79
SwissprotQ9FLJ21e-62NC100_ARATH; NAC domain-containing protein 100
TrEMBLK3YUQ50.0K3YUQ5_SETIT; Uncharacterized protein
STRINGSi018001m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-76NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]