PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G227600.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 302aa    MW: 32587.4 Da    PI: 10.5686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G227600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.96.3e-07158190639
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.ST CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskK.ls 39 
                         +++Er RR ri +++ +L+el+P+ +   + +  +s
  Sevir.1G227600.3.p 158 SIAERERRTRISEKLRKLQELVPHmD---KVTStPS 190
                         689*********************77...4443344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.248152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-6155199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00113156186No hitNo description
Gene3DG3DSA:4.10.280.109.1E-6158192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MIFNYTRLVG LNYAGYPGSK GAGGSGGAEA SGSGRKMKPS QFNFTRPQPG GAAGHLSQIS  60
EDGAFPPGLV GDRAGESSSS GGGAAAARSF SGGFSIVGPW EESRDIIATL GAYDSQFSGA  120
MAGTALEMAG MDRYMQLQPD QMPFKVRAKR GCATHPRSIA ERERRTRISE KLRKLQELVP  180
HMDKVTSTPS KTSLSIAFMI VVQKLSHAHR SIACTPISRV LITRVLPSQI TIRFDFSRYR  240
ACLGLLRFRF CNSASKSSCQ TLPAPTILTP EKKVDLRINS KAFMELLRGC SKNIDFVPQY  300
H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G227600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-125EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953019.16e-94transcription factor bHLH128
TrEMBLA0A368PNF01e-106A0A368PNF0_SETIT; Uncharacterized protein
STRINGSi017194m3e-92(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-26bHLH family protein