PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G221600.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 307aa    MW: 34287.5 Da    PI: 5.5746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G221600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.13e-181510550128
                 NAM  50 kvkaeekewyfFskrdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127
                          +k++ ++ +fF++ +k+y  g+rk+r             ++ +W++tg++k++++ +g ++g kk++v+y  + r +k+ +++Wvmh+y+
  Sevir.1G221600.3.p  15 GMKTDGSNAHFFHRVSKAYGCGQRKRRRviscssdhtvtDEHVRWHKTGRSKPIYD-NGVKKGWKKIMVLYktSHRGEKPDRAHWVMHQYH 104
                         456777899******************66999999988545889************.999***********4434778888*********9 PP

                 NAM 128 l 128
                         l
  Sevir.1G221600.3.p 105 L 105
                         8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.2181124IPR003441NAC domain
SuperFamilySSF1019415.23E-2117124IPR003441NAC domain
PfamPF023659.0E-623105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKESAIHTLK IFLVGMKTDG SNAHFFHRVS KAYGCGQRKR RRVISCSSDH TVTDEHVRWH  60
KTGRSKPIYD NGVKKGWKKI MVLYKTSHRG EKPDRAHWVM HQYHLGQEED EKDGDLVVSK  120
IFCQITNKSM EISETEAAYD KPDASASVIG PKTPTPKTNA PQPRLANNSP CETEQNVSIL  180
QDQLLLQDEG EPIIPVVSLE DDAMNPAWCA GAEEQQAVGG ASRAQLNLDE PLLCREDPNS  240
LNDDTLLPMD YPILSQCRNE ILDRSLNTFY GLPDLHNVDL GTPPDLQLGD LQFGSQESLG  300
SWLDRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741RKRRR
23842KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G221600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952971.10.0NAC domain-containing protein 73
TrEMBLK3YSZ80.0K3YSZ8_SETIT; Uncharacterized protein
STRINGSi017393m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.17e-36NAC family protein