PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G221000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 306aa    MW: 32649.2 Da    PI: 8.3681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G221000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174090256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +gr++AeIrdp     +  r +lg+f taeeAa a++ a+++++g+
  Sevir.1G221000.1.p 40 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFNTAEEAACAYDVAARAMRGN 90
                        69*******.**********84....35999**********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.02E-283999No hitNo description
PROSITE profilePS5103222.8664097IPR001471AP2/ERF domain
PfamPF008471.3E-104089IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-224098IPR016177DNA-binding domain
SMARTSM003804.7E-3540103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-304098IPR001471AP2/ERF domain
PRINTSPR003673.6E-94152IPR001471AP2/ERF domain
PRINTSPR003673.6E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGAHLFAHT HGHHHRSKRP TPAGIMDADG DGDASPKGAR YRGVRRRPWG RFAAEIRDPM  60
SKERRWLGTF NTAEEAACAY DVAARAMRGN KARTNFPVHA AAAACWPWGA APQPVAGART  120
LDPIFLHNLL MSSSYQGCRL LHHAVHGYPS PARPLPPAPA PTPTAPAPGA MAVPAVTAPA  180
VASSPVAPLS MDMDVWGRAL RTEPPDAGLL QDALHGFYPS MLPRAAVDHP MELGADARDA  240
VAAMKKLERH EVSAVAFPCV GDDVDEDGEH PMMPQGLLED IIRYPAFVDV AAAPPAATRR  300
GRRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-193799265ATERF1
3gcc_A4e-193799265ATERF1
5wx9_A5e-192697172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G221000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955046.10.0ethylene-responsive transcription factor 3
TrEMBLK3YYH50.0K3YYH5_SETIT; Uncharacterized protein
STRINGSi019328m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-10ERF family protein