PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G220900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 290aa    MW: 31062.7 Da    PI: 7.0507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G220900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-174190255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +gr++AeIrdp +   r r +lg+f+tae+Aa a++ a+++++g
  Sevir.1G220900.1.p 41 RYRGVRRRP-WGRFAAEIRDPAS---RERRWLGTFDTAEQAACAYDVAARAMRG 90
                        69*******.**********843...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-2740100No hitNo description
PROSITE profilePS5103223.1824198IPR001471AP2/ERF domain
PfamPF008471.4E-104190IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-214199IPR016177DNA-binding domain
SMARTSM003806.5E-3541104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-304199IPR001471AP2/ERF domain
PRINTSPR003672.8E-94253IPR001471AP2/ERF domain
PRINTSPR003672.8E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEDATNAHLY AHAHLHRSKR PSPAAFKEED GDCDALHKGA RYRGVRRRPW GRFAAEIRDP  60
ASRERRWLGT FDTAEQAACA YDVAARAMRG SKARTNFPVH AAAGFWPWGA PPQPAHTLNP  120
FLLHNLIMSS SHHGFRLLHQ AGHGHVVNSS APSKPPAPVA AAIPAPSPVA PPPSDLDDED  180
VDDWAGLMRG EPADAGLLQD ALHGFYPAGT RPRGGASRSL SASGADARAA AADVPVKQER  240
YDAFVDIDGE EGGEYPMMPQ GLLGDVIQYP AFMEVVAAPS APTRRGRWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2138104269ATERF1
3gcc_A9e-2138104269ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G220900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548772e-90EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955045.10.0ethylene-responsive transcription factor ESR2
TrEMBLK3Z0S10.0K3Z0S1_SETIT; Uncharacterized protein
STRINGSi020138m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-21DORNROSCHEN-like