PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G207800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 393aa    MW: 41615.6 Da    PI: 6.6917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G207800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.2e-07178199223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Sevir.1G207800.1.p 178 FCEICGKGFRRDANLRMHMRAH 199
                         6*******************99 PP
2zf-C2H211.10.0012266290123
                         EEETTTT..EEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                         y C+ C+  k+F    +L++H+r +
  Sevir.1G207800.1.p 266 YACERCDgkKRFAVLADLRSHLRHC 290
                         89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-6174199No hitNo description
SMARTSM003550.0017177199IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676177199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-6177199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SMARTSM0035576228261IPR015880Zinc finger, C2H2-like
SMARTSM0035520266289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDSTTSTQVA GAAGSRSRSI ASRGSTTPPP LTMPGREPSD ALVGGGAGGA DGDPSLALLR  60
LAALGDRMAA VRGRIAASIS GEARPLSYAD IQSVSSEISY TAQLVVLNAA SLLASSVPFP  120
APTPPPTAAA PSPAPIREIP AAAAASAQEQ PLEAAKGDGG YDVVELDAAE LLAEHVHFCE  180
ICGKGFRRDA NLRMHMRAHG DRFKTLDALS RPGHGKPKPP AGDREVRFSC PFAGCNRNRA  240
HRRFRPLKSA VCARNHFRRS HCPKLYACER CDGKKRFAVL ADLRSHLRHC GEEAQWRCSC  300
GTTFSRKDKL FGHLALFEGH TPAVTEPNKD VAAGPTEPVL DAMEEGGIEE GNCDREEDEE  360
GGYDPEFFTE WMEELRDGAS GSNWAGPAAA GH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G207800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952852.10.0zinc finger protein STAR3
TrEMBLK3YT600.0K3YT60_SETIT; Uncharacterized protein
STRINGSi017455m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-69C2H2 family protein