PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G201900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 192aa MW: 20424.7 Da PI: 5.2972 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 22 | 73 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr++k +g+Wv+eIr p g + r++lg+f++ae Aa a++ a+++l+g+ Sevir.1G201900.1.p 22 PQYRGVRRRK-WGKWVSEIRQP---GTKVRVWLGSFDSAEAAAVAHDVAALCLRGP 73 68*****998.**********8...325**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-12 | 22 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.051 | 23 | 81 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 23 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-35 | 23 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 23 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.63E-17 | 24 | 81 | No hit | No description |
PRINTS | PR00367 | 8.2E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MENHHHIQQQ QPAAPAAAAA TPQYRGVRRR KWGKWVSEIR QPGTKVRVWL GSFDSAEAAA 60 VAHDVAALCL RGPRDAQLNF PGSAGWLPRP ASTDPADIRA AAAEAAERVR REPALVAAAA 120 AEPGRAPPGS RLDDLAVGGE FEDDLESSPR LWTEMAEAML LDPPKWGPDG SDGSEASGSQ 180 HWPQGSLWDA C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 19 | 81 | 1 | 63 | ATERF1 |
3gcc_A | 3e-14 | 19 | 81 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G201900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952770.1 | 1e-132 | ethylene-responsive transcription factor ERF024-like | ||||
TrEMBL | A0A368PN46 | 1e-130 | A0A368PN46_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G139740_P01 | 2e-73 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G201900.1.p |