PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G194100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 911aa MW: 93501 Da PI: 10.2976 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 207 | 249 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W++eEd l+ +v+++G g+W+ I+++ Rt+ q+ rw Sevir.1G194100.1.p 207 KAWSKEEDADLAAGVQKFGEGNWDYISNKCKFDRTPDQLSQRW 249 58****************************9789****99999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 200 | 254 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.93 | 201 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-12 | 204 | 255 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-6 | 205 | 255 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-7 | 207 | 249 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.56E-11 | 212 | 254 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 911 aa Download sequence Send to blast |
MAAAAAPAAG AGKGKRKRPL SEDDVYLLLH RYAPGTILTA LQEVAQHAEG GRRIDWKAVV 60 GKSATGITSA REYQMLWRHF AYNHDLDETV DAGDQPLGDD SDLELEPEPV PNPSKEALSE 120 ASALAKALIS GSSREQASGQ RVNLDAPVLN SPNEKIVRVP SEKQLAQGHR ITNVTGPVSN 180 SKQASHLGPS PGSLDPNGPS KKKKKPKAWS KEEDADLAAG VQKFGEGNWD YISNKCKFDR 240 TPDQLSQRWA LICKRPGGST KPASTKHGTV ASSEERKDAL KALSMAVGPI RRSSMLRPGA 300 YQQGIQHKSA VFAPKIPEVR PAAAPSPALA LPVPVPVPVP VPVPLPVKVQ VNSPLPQGQQ 360 APVQRAPPKL ANASNKARKK QPAQPNPPVG PSSIKEAAFA AGGRLAPAEA AADFLKVTQN 420 IRSQVTGSSK SSAGPKAPSV VVEPGTQPGS TQHLEPLSTS AHKSGPSVLT THATEQGHGA 480 SEVAVVNPPG PSDGAHSLET KKALSTTPVP GSCDIEEKED DSTFCVITID DLFPEDAMQP 540 ETVDLKAKQP EIVDQKANQQ AEIVSQRAKQ PETVDPKAKQ PETADPKAKQ PENADPKAKQ 600 PDALNPKVEM VDPKDKDMLE FDQFVASQGG VNTDHLDKSK TGGSASQAQG LAGSQKKQVK 660 LVPTVGKGNP VSAAAPATVK RIKTPVPHLV NPVPAGTPRG IVGTVNANAP NKTLVRKAAT 720 PAPAGVQAPP LKKHAVNIKG NQAMQPSTAV AGSGVPASSQ ASVAVNGASK ANPPPSSAQA 780 SAVVNIGSKA NPPSSGQASM VVNVGGKANP PSSGQASVVV NVGSKANPPS SGQASAAVNG 840 ANRVANPQSS RQASVVVNGA NRAANPQSSS QVSVAVNGSN SAANVPSSSQ AGAAASGAAN 900 KSNPPGAPKQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G194100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679456 | 0.0 | HF679456.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB50 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952835.1 | 0.0 | nascent polypeptide-associated complex subunit alpha, muscle-specific form | ||||
TrEMBL | K3YPR8 | 0.0 | K3YPR8_SETIT; Uncharacterized protein | ||||
STRING | Si016260m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 6e-31 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G194100.1.p |