PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G193700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 715aa MW: 80674.8 Da PI: 6.5063 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.6 | 3.7e-22 | 93 | 179 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek + +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la Sevir.1G193700.1.p 93 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 179 7****************************************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-19 | 93 | 179 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.6E-26 | 303 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.767 | 586 | 622 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.8E-4 | 594 | 619 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0024 | 597 | 624 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MSPVESAAAG ADQAGEGAVV PHEDGVGGGG GDVATTEAQV AMVVSTSGDE RRVEYGDDAE 60 NEGEEAATVQ GSKEGTEELL RKVVYSEEAA YKLYCDYGHR MGFSIRKGKQ SYFTGTKRIR 120 TKDYFCSKEG LKEGEKLTDA NFNDPHTRTN CRAMVRFRVN DHGEWKVIRL VSDHNHNLAR 180 PEERHLLRSA RSLIAGRSSS VEAMLYAGYQ VQGGAPQLPA GSTSATNNVD NSKQHLLLGY 240 GAAVKTLAVG TGDLQSLVSY LKTRANEDAM FYWDVQLDQS GRMTNFFWRD GRSRIDYDCF 300 GDVIVFDSTY RLSKQNLICA PFVGVNHHWQ TTMYGCALLA DESMSAFVWL FKSFLESMGN 360 RHPQSIFTNL DQVVSKAIEE VFPNTCHRIA HWHIQKNAHS RLGYLNVSKG FNKMFTKCIQ 420 GCDSETEFEE TWAQMIHEFK LQDNKWLKKL YKLKQKWCSA LNKGTFDGGV EYEPQCDSMS 480 SIFNSVADKL TSLSAIAVTV DKQSEDWREK ELEEDTRCLQ KPPACIIKHS DILNHAAKVY 540 THRIYKLFET DFLDGCGATK FKELPCEDNN THQFEMTMQG RGSRVCTVRL NMSTMELSCS 600 CSKFETMGLL CPHALKALSI KNICKIPESY ILKRWTKDAK KWVFNPKQYE SSYQECMDDD 660 DAYCNYVMRY AYDLVTKSQG QEELRKALWE TLESGEKELE KHLGNGTQYA AYAT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G193700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704124.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | K3YQD4 | 0.0 | K3YQD4_SETIT; Uncharacterized protein | ||||
STRING | Si016477m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-84 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G193700.1.p |