PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G192000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 269aa    MW: 27708.1 Da    PI: 9.1305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G192000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19104153255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         gy GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++l+g
  Sevir.1G192000.1.p 104 GYCGVRRRP-SGKWAAEIRDPR----KaARVWLGTFVTAEDAARAYDAAALRLRG 153
                         788******.7*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.551104161IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-21104162IPR016177DNA-binding domain
PfamPF008478.1E-13104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30104162IPR001471AP2/ERF domain
SMARTSM003801.9E-33104167IPR001471AP2/ERF domain
PRINTSPR003673.9E-8105116IPR001471AP2/ERF domain
CDDcd000182.83E-17105163No hitNo description
PRINTSPR003673.9E-8127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRPPQSSPAL VALTEDAEAA VIVAALTHVI THGRGAAPTP PGTSLAVPPC PSTATGCHLG  60
HVGQAACHGE PSPPAHVVSG TSARSPAPEA QRPTAAAAAS VRRGYCGVRR RPSGKWAAEI  120
RDPRKAARVW LGTFVTAEDA ARAYDAAALR LRGSRAKLNF PEDVLSLGHM PAAAGSRQPG  180
SGWDRTMDQS PCPEMVRRRE AMDGFIGGGN GRFLGFWSIG TSSPSPTPKP TCSAAPVVAP  240
LLSESHGTGS SGIEDDAYGV WERTNSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20105166668ATERF1
3gcc_A2e-20105166668ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G192000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549114e-45AK354911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1013E04.
GenBankAK3630784e-45AK363078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012J04.
GenBankAK3658344e-45AK365834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038B24.
GenBankAK3658784e-45AK365878.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038I11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954975.11e-127ethylene-responsive transcription factor 1
TrEMBLK3YYC00.0K3YYC0_SETIT; Uncharacterized protein
STRINGSi019270m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-19ERF family protein