PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G190800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 531aa MW: 61120.9 Da PI: 5.8552 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.5 | 9.6e-28 | 55 | 144 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +YA +vGF+vr+++ +ks++ngei ++++vCs+eg+++ +k++ ++++++++ trtgCka+l+v+ ++ + k+ev+ +e +HnH+l+ Sevir.1G190800.1.p 55 EFYLNYAWKVGFTVRREYANKSRKNGEISSSKYVCSREGFKSMDKRT-NRSKTPQPDTRTGCKACLTVRHNNdSTKYEVYGFEPKHNHPLV 144 6******************************************9999.9*********************9999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-24 | 55 | 144 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 9.213 | 70 | 144 | IPR003657 | WRKY domain |
Pfam | PF10551 | 5.5E-17 | 274 | 352 | IPR018289 | MULE transposase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MGSTSREPPP DPPAPPPARA GDTEARRSIA SLQEAAGDYT PRLGREFDSE LEAYEFYLNY 60 AWKVGFTVRR EYANKSRKNG EISSSKYVCS REGFKSMDKR TNRSKTPQPD TRTGCKACLT 120 VRHNNDSTKY EVYGFEPKHN HPLVVPSCAN PLQRKLVDIQ SAQANNSSNV TSACEPESRN 180 SVIGDNAVTS REWQRPLRIR RQREIEYGEA AALLNYLQDQ SRADPLFYHA VQLDTEDKVA 240 NIFWADVKMI TDFSQFGDVV SFDIVSRDSM DLRPFASFVG FNNYGETVLL GMALMYDGTV 300 ESFHWLFDTF LNAMSGCAPR TIFYRQDAYV GMAISMVMPD TCHALCTWHL KQTAKSNINY 360 LIKRDCDFMK EFKACINYYE EERELFTSWE VMINKYSLHG NVWLQKVFEE KEKWAGPYMK 420 WTFSAGMKNT QLNERLHSDV GDYLRTDVDI TLFMKHLQKV VDDRRYTELE IEFSSKLKLP 480 DFKIRAPILI QASEAYTDMI FQLFQEEYEE FQSAYIEGLS SPVPMGQLHY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G190800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952692.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A368PLS3 | 0.0 | A0A368PLS3_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368PLS5 | 0.0 | A0A368PLS5_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368PMS7 | 0.0 | A0A368PMS7_SETIT; Uncharacterized protein | ||||
STRING | ORGLA02G0169200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-82 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G190800.1.p |