PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G187100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 327aa    MW: 34705 Da    PI: 4.4327
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G187100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.71.3e-2491431128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk.. 88 
                         lppGf F P+d ++v +yL ++v g++l+++  i + d +++ Pw+L  + ++++++ +fF+  + k+ +g+r++r  +  g+W+   +  
  Sevir.1G187100.1.p   9 LPPGFLFAPEDGDVVAHYLLPRVLGQPLPMDGLILDDDPLTAPPWELL-ERNGRKEDAFFFALGQVKSGKGSRQKRtCAGGGFWNGERTcv 98 
                         79****************************999**************7.445677899******************77789***9443322 PP

                 NAM  89 dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         d e l+       +  + + kk L f +g a+kg +t Wvmhey++
  Sevir.1G187100.1.p  99 DGEELRVpglggkEVVVAWRKKALSFQDGGAEKG-STGWVMHEYAI 143
                         33333335776433333789************98.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-315162IPR003441NAC domain
PROSITE profilePS5100528.6719162IPR003441NAC domain
PfamPF023654.0E-1510142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEVPRALGLP PGFLFAPEDG DVVAHYLLPR VLGQPLPMDG LILDDDPLTA PPWELLERNG  60
RKEDAFFFAL GQVKSGKGSR QKRTCAGGGF WNGERTCVDG EELRVPGLGG KEVVVAWRKK  120
ALSFQDGGAE KGSTGWVMHE YAITAPDHLA EPQLMLYRIR FSDHGRKRKR GEADPCAGEA  180
APAAARRRVA EDTLLHIDML TSSSDPIPIC SSTVLADEAD VDCVNGAEHQ AAPVTVSAGQ  240
DLIPGDIDTS WDMGFLENID IDELLRSIED PSSPNRAVLP AVTDTGAYVD ADGTVSDFYQ  300
TAMAAAAPPY AGVGASLVAP SAPGSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-12714313140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170GRKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G187100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.11e-143uncharacterized protein LOC112890817
TrEMBLK3YY980.0K3YY98_SETIT; Uncharacterized protein
STRINGSi019248m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-16NAC domain containing protein 41