PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G177600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 259aa    MW: 27800 Da    PI: 4.8006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G177600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-193586156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Sevir.1G177600.1.p 35 TKYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNLRGA 86
                        699*******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-113585IPR001471AP2/ERF domain
CDDcd000183.81E-283594No hitNo description
SuperFamilySSF541712.48E-213693IPR016177DNA-binding domain
SMARTSM003802.8E-333699IPR001471AP2/ERF domain
PROSITE profilePS5103221.473693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-293693IPR001471AP2/ERF domain
PRINTSPR003671.3E-83748IPR001471AP2/ERF domain
PRINTSPR003671.3E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDFSYFFSSS SEKKSSKRRQ QQQQQQQQDS GNNETKYLGV RRRPWGRYAA EIRDPATKER  60
HWLGTFDTAE EAAIAYDRAA RNLRGASART NFAYPDLPPG SSITPYLSPD LSADQLQSYY  120
AAGPVVPAAH QSTPLARDQA QAYSHGGAGS EAYQYHVPAE VPSYGALDAS MAYGGNAEKM  180
DMYFDGGNGG GGAASGGGRA WCDAAELDFG GYNDAAASGS HGMYFEEGYV HSPLFSPMPA  240
ADEVDGFQLG GSSSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-183192971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11219KKSSKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G177600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278671e-128KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952596.11e-156ethylene-responsive transcription factor LEP
TrEMBLA0A368PLG01e-154A0A368PLG0_SETIT; Uncharacterized protein
STRINGSi019641m1e-149(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-29ERF family protein