PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G177100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 283aa    MW: 29565 Da    PI: 9.5655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G177100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1986135255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa a++ a+++++g
  Sevir.1G177100.1.p  86 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAMAYDDAALRFKG 135
                         7********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-3285144IPR001471AP2/ERF domain
SMARTSM003806.0E-3586149IPR001471AP2/ERF domain
PROSITE profilePS5103225.22586143IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2286144IPR016177DNA-binding domain
PfamPF008474.9E-1386135IPR001471AP2/ERF domain
PRINTSPR003671.6E-118798IPR001471AP2/ERF domain
CDDcd000181.18E-1494144No hitNo description
PRINTSPR003671.6E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSAPATAPSP YHAQAQQHGA YGSTMPYYDV GVGSSAISSH QTGHLAAPAP AMSPHQQATP  60
EAGTAAAAAA ASQAAEVQEG NVMRRHYRGV RRRPWGKWAA EIRDPAKAAR VWLGTFDTAE  120
AAAMAYDDAA LRFKGAKAKL NFPERVRGRT GQGVFLVTPG VPQLPPVAPL PPSPLPTVAV  180
PFPDLMRYAQ LLQGGNSRNV VAGDTGYLAP PPAQASSSVQ ILDFSTRQLL RGSPTTFGRQ  240
PSTTSASMST TTASSSPSMW PHVEATTSGV DETHDESRNA PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2585146466ATERF1
3gcc_A3e-2585146466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G177100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057497e-84AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058427e-84AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149587e-84AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-84CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313307e-84CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702595.10.0ethylene-responsive transcription factor ERF110
TrEMBLK3YUS80.0K3YUS8_SETIT; Uncharacterized protein
STRINGSi018024m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-20related to AP2 6l