PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G176100.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 248aa    MW: 26202.1 Da    PI: 4.908
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G176100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.33.1e-2629134186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                         rWt+qe+l+Lie++r +e r +rg                        + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e
  Sevir.1G176100.3.p  29 RWTRQEILVLIEGKRMVEGRGGRGGrgrvaaaaaaaaasassgeaaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWE 119
                         8********************99866778888889999999999999888***************************************** PP

            trihelix  69 kkrtsessstcpyfdqle 86 
                         +     + s+ p f  ++
  Sevir.1G176100.3.p 120 RAA---AASREPSFWAMR 134
                         *86...333557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-52941IPR009057Homeodomain-like
PfamPF138372.7E-1030133No hitNo description
Gene3DG3DSA:1.10.10.605.8E-575108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MSNAGDPAGA AAPAAATVTP SGRAPRLPRW TRQEILVLIE GKRMVEGRGG RGGRGRVAAA  60
AAAAAASASS GEAAAAALEP KWAAVAEYCR RHGVERGPVQ CRKRWSNLAG DYKKIKEWER  120
AAAASREPSF WAMRNDARRE RRLPGFFDRE VYDILEGRGR AILAGRSAGN AAEEEEAVAV  180
ARVEEEKEAG PTEAVFDSGR PATEEALFSE DEEDEEEEAP AAAPPPPPPP VIAVPVSAFD  240
SLMNSSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G176100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8354751e-131CT835475.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952586.11e-162trihelix transcription factor ASR3
SwissprotQ8VZ207e-53ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLK3YTS81e-161K3YTS8_SETIT; Uncharacterized protein
STRINGSi017674m1e-162(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-47Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]