PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G167600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24956.2 Da PI: 9.8096 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 97 | 138 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt +eAa+++++a+ Sevir.1G167600.1.p 97 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 138 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.966 | 72 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 96 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-6 | 96 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-8 | 96 | 141 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-6 | 99 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGKDSLP VDLPKPIENE KPVEVVHSNV KTFSVHPLPP TSDVLTKSSN 60 GSDDSKEEKT QYYPGKEIKR RKRHRRKQYV DQEPCIMRGV YFKNMKWQAA IKVDKKQIHL 120 GTVGTQDEAA RLYDRAAFMC GREPNFELSE EEKQELRKYT WEDFLAVTRN TITSKKQKKV 180 GLLRRSKADL FMGQSDGDTE MANGGGSSNS DNGDAETSAS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G167600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064879 | 0.0 | BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952530.1 | 1e-165 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | K3YVL0 | 1e-164 | K3YVL0_SETIT; Uncharacterized protein | ||||
STRING | Si018306m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 4e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G167600.1.p |