PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G145300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 402aa MW: 43242.3 Da PI: 8.7793

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G145300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	233	288	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Sevir.1G145300.1.p 233 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.47	230	290	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-17	231	291	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	231	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-27	233	288	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-6	235	286	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MDPPLPSPQY AHRRRCSEYL LALEEERRKI QVFKRELPLC LQLVTQTIEG MKSQMHGVGS 60 EGTVSDHGPV LEEFMPLKPS LSLSSDEHES ADDAAATNDV GKKEKAAETH GRQSPPTEAN 120 KAMPDWLQSV QLWSQEPQQQ PSSPRKELLC KPVALNTRKA GDAFQPFVKE KRAEMPASPT 180 TAAASSAVVG DSCDKVATDT SEKHSDKEMN KDAKDMGKYS KDKEGQSQAP NRKPRRCWAP 240 ELHRRFLQAL QQLGGSHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPNSTTVVQS 300 TSTSAAQPAP QFVVVGGIWV PPAEYATAAA AASAAAAAQS QVQLAGDASG TANTVYAPVA 360 TLPSGTRQGQ RQSSRCSGGR RSGDASSDSP AVSSSSHTTS A*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MDPPLPSPQY AHRRRCSEYL LALEEERRKI QVFKRELPLC LQLVTQTIEG MKSQMHGVGS  60
EGTVSDHGPV LEEFMPLKPS LSLSSDEHES ADDAAATNDV GKKEKAAETH GRQSPPTEAN  120
KAMPDWLQSV QLWSQEPQQQ PSSPRKELLC KPVALNTRKA GDAFQPFVKE KRAEMPASPT  180
TAAASSAVVG DSCDKVATDT SEKHSDKEMN KDAKDMGKYS KDKEGQSQAP NRKPRRCWAP  240
ELHRRFLQAL QQLGGSHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPNSTTVVQS  300
TSTSAAQPAP QFVVVGGIWV PPAEYATAAA AASAAAAAQS QVQLAGDASG TANTVYAPVA  360
TLPSGTRQGQ RQSSRCSGGR RSGDASSDSP AVSSSSHTTS A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-13	233	286	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-13	233	286	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-13	233	286	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-13	233	286	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	233	286	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G145300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035536	6e-79	BT035536.2 Zea mays full-length cDNA clone ZM_BFb0068J14 mRNA, complete cds.
GenBank	KJ726838	6e-79	KJ726838.1 Zea mays clone pUT3378 G2-like transcription factor (GLK5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	0.0	transcription factor NIGT1
Swissprot	Q6Z869	1e-136	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	K3Z084	0.0	K3Z084_SETIT; Uncharacterized protein
STRING	Si019945m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-63	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G145300.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]