PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G126800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 371aa    MW: 40596.1 Da    PI: 4.8985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G126800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-18121392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                         ppG+ F+P d+elv ++L ++++g++  ++   vi++    ++ Pw+L k++   ++ + yfF++++   a   r+ r    +g+W ++ +
  Sevir.1G126800.1.p  12 PPGINFRPDDDELVEFFLLPRLRGEPswFPGVVVIDDDSAANTLPWNLLKRHGMaDDGNAYFFVHTNDVVA---RQDRyCPGDGTWVSQRQ 99 
                         8*************************776665679999**********854444155589*****999876...77775778*****9999 PP

                 NAM  89 dkevlskkgelvglkkt.LvfykgrapkgektdWvmheyrl 128
                         +    +  ge++  k+t L +  gr +kg +  Wvmhey+l
  Sevir.1G126800.1.p 100 ESGSSCICGETIKWKTTnLNLQMGRGKKG-SMGWVMHEYTL 139
                         88777777788777765499999999998.899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-234153IPR003441NAC domain
PROSITE profilePS5100522.90911155IPR003441NAC domain
PfamPF023651.1E-1312139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSTKAAQILG HPPGINFRPD DDELVEFFLL PRLRGEPSWF PGVVVIDDDS AANTLPWNLL  60
KRHGMADDGN AYFFVHTNDV VARQDRYCPG DGTWVSQRQE SGSSCICGET IKWKTTNLNL  120
QMGRGKKGSM GWVMHEYTLT EPPCPFLKIC HVTFAGHGKW RKRVPDDESG CQATGEPASK  180
RARVAAAAAA NSGSSTCAYG STAPAIDQGY GADHASGDPA HQTRISDQEL SVAAAHASAY  240
QQEHLLSFPI HQGISPSNQE LIDGTYLPPC MELEELRQTT DQPVQSSFWS FPYSAATGGA  300
ELFLEVPTIQ QHQPMVHEAS TAEYQGISET AHQQLMVQET TGTAEHQLGL DEQEQLFWKS  360
LHVDIENIVC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G126800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.19e-60NAC domain-containing protein 48
TrEMBLA0A368PKR31e-144A0A368PKR3_SETIT; Uncharacterized protein
STRINGSi019235m1e-137(Setaria italica)
STRINGSi019409m1e-137(Setaria italica)
STRINGSi019812m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.18e-08NAC domain containing protein 60