PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G119100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 313aa    MW: 34471.1 Da    PI: 9.6837
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G119100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-1366105343
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                          W+ eE + l++ v+++G+++W+t+ar +  gR+++qc++r
  Sevir.1G119100.2.p  66 TWSREENDNLIQKVNLHGSKSWSTVARGIT-GRSPNQCRER 105
                         7****************************9.********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.91E-1147110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1357124IPR009057Homeodomain-like
PROSITE profilePS5129413.25459114IPR017930Myb domain
SMARTSM007173.0E-863112IPR001005SANT/Myb domain
CDDcd001673.50E-1066105No hitNo description
PfamPF002491.3E-1166105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRRSGGGAAR QQSSGRSTSC SHEIDWIADE RGELRRPSKH FKDKEQKRTA EFLPHKAYNS  60
LKRRHTWSRE ENDNLIQKVN LHGSKSWSTV ARGITGRSPN QCRERTGKAI KNHWPSLVRK  120
QMKSDLVKGL PKQFPLVTKN KGSSTIKSGQ DSSINIHVSP DMPVTPILEQ GLAKNGRNES  180
TLKGKDYDST HGEGYVSHSV NVSEKVDGQI GRYNSSSSGD QKVSSATASF PGSPPKEEST  240
NLLEVTPNRG FSQAYNHLSN NDRSDAICSS ADPESQELHG SNIADLLDMS YCESLMIVPP  300
DSPNHRNSMD GM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G119100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952183.10.0transcription factor MYB3R-4
TrEMBLA0A368PLM40.0A0A368PLM4_SETIT; Uncharacterized protein
STRINGSi017986m1e-154(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.13e-12myb domain protein 3r-4