PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G119100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 356aa MW: 39593.1 Da PI: 9.7332 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.4e-15 | 66 | 110 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W+ eE + l++ v+++G+++W+t+ar + gR+++qc++rw yl Sevir.1G119100.1.p 66 TWSREENDNLIQKVNLHGSKSWSTVARGIT-GRSPNQCRERWMFYL 110 7****************************9.***********9875 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 117 | 157 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W+++Ed +l++a+k +G++ W + a+ ++ gRt+k +k++w Sevir.1G119100.1.p 117 QPWSEQEDIKLIQAHKTHGNK-WCKLAKLFP-GRTGKAIKNHW 157 79*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.078 | 59 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-27 | 62 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-12 | 63 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 66 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 66 | 110 | No hit | No description |
Pfam | PF13921 | 3.1E-15 | 67 | 127 | No hit | No description |
PROSITE profile | PS51294 | 21.297 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-14 | 115 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 116 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-12 | 118 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MRRSGGGAAR QQSSGRSTSC SHEIDWIADE RGELRRPSKH FKDKEQKRTA EFLPHKAYNS 60 LKRRHTWSRE ENDNLIQKVN LHGSKSWSTV ARGITGRSPN QCRERWMFYL DPAVNNQPWS 120 EQEDIKLIQA HKTHGNKWCK LAKLFPGRTG KAIKNHWPSL VRKQMKSDLV KGLPKQFPLV 180 TKNKGSSTIK SGQDSSINIH VSPDMPVTPI LEQGLAKNGR NESTLKGKDY DSTHGEGYVS 240 HSVNVSEKVD GQIGRYNSSS SGDQKVSSAT ASFPGSPPKE ESTNLLEVTP NRGFSQAYNH 300 LSNNDRSDAI CSSADPESQE LHGSNIADLL DMSYCESLMI VPPDSPNHRN SMDGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-27 | 67 | 165 | 7 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-27 | 67 | 165 | 7 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-27 | 67 | 165 | 7 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G119100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952183.1 | 0.0 | transcription factor MYB3R-4 | ||||
TrEMBL | A0A368PLM4 | 0.0 | A0A368PLM4_SETIT; Uncharacterized protein | ||||
STRING | Si017986m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16796 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 7e-36 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G119100.1.p |