PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G116000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 237aa    MW: 24891.3 Da    PI: 6.3078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G116000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-15244448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++eE++  +++ ++lG++ W+ Ia +++ gRt++++k++w++yl
  Sevir.1G116000.2.p  2 FSQEEEDVVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 44
                        89*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.584148IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-20245IPR009057Homeodomain-like
PfamPF002491.3E-13244IPR001005SANT/Myb domain
SMARTSM007171.0E-10246IPR001005SANT/Myb domain
CDDcd001671.52E-12244No hitNo description
SuperFamilySSF466891.95E-13250IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFSQEEEDVV INLQAKLGNK WSQIAMHLPG RTDNEVKNYW NSYLKKRVMQ AQGGSNPKSP  60
PELTSMSTTE PAMSMSMPHH HHVKNSSGGS TTTSHDQDAT NISSNGGGSH GLSAPAPLLT  120
AQQPFDHQAQ QQPKNFVFSD WGVPAPAPAP ESYSVSAHWP ASTASSGNVT PSHGGAFGDR  180
MSGSYGALPL HQDHQISAAA AGHGAATGIA GSGYFDLLNM GDIYGGFSST NDDLLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G116000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686646e-56AK368664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952152.11e-172transcription factor LAF1
TrEMBLK3YUF31e-171K3YUF3_SETIT; Uncharacterized protein
STRINGSi017899m1e-171(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.19e-20myb domain protein 65