PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G090700.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 451aa MW: 49209 Da PI: 6.8357

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G090700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	269	323	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++LGG+ekAtPk +l+lmkv+gLt++hvkSHLQkYR Sevir.1G090700.3.p 269 KTRLRWTLELHERFVEAVNKLGGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRF 323 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.68	266	326	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-30	268	324	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-17	268	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-25	269	323	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	271	322	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-21	359	404	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MSTQSIISVK QFAGPHRMAH TCTAPQPSAH NLLSAKSDNC GSAHDPRSSW AAVQTSSIKS 60 EMVGSLSLTK ILPFNLEKCS PGSNPDSAVS HVSQAELSEP VSSSSSTFCT SMFSSFQTNS 120 ESCRQKGALP FLPHPPKCEQ KLQQQISAGQ SSSSSSLLFG ADLSSGGHDD AGDLKDFLNL 180 SGDVSKGSFH GESSAMAFSE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDR PLQTSSCPVP 240 SYSGQEDLPS AVSPVKVQLS SSRPEACNKT RLRWTLELHE RFVEAVNKLG GPEKATPKGV 300 LKLMKVEGLT IYHVKSHLQK YRFAKYLPET KEDKKSSSEG KKSQSAIPGN DAGKKKSLQV 360 AEALQMQMEV QKQLHEQLEV QRQLQLRIEE HARYLQKILE GQQKARNSLS TTRNSAQEEL 420 PESTEKEETG MKVETSSEPL SRSKISDTDV *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MSTQSIISVK QFAGPHRMAH TCTAPQPSAH NLLSAKSDNC GSAHDPRSSW AAVQTSSIKS  60
EMVGSLSLTK ILPFNLEKCS PGSNPDSAVS HVSQAELSEP VSSSSSTFCT SMFSSFQTNS  120
ESCRQKGALP FLPHPPKCEQ KLQQQISAGQ SSSSSSLLFG ADLSSGGHDD AGDLKDFLNL  180
SGDVSKGSFH GESSAMAFSE QMEFQFLSEQ LGIAITNNEE SPRLDDIYDR PLQTSSCPVP  240
SYSGQEDLPS AVSPVKVQLS SSRPEACNKT RLRWTLELHE RFVEAVNKLG GPEKATPKGV  300
LKLMKVEGLT IYHVKSHLQK YRFAKYLPET KEDKKSSSEG KKSQSAIPGN DAGKKKSLQV  360
AEALQMQMEV QKQLHEQLEV QRQLQLRIEE HARYLQKILE GQQKARNSLS TTRNSAQEEL  420
PESTEKEETG MKVETSSEPL SRSKISDTDV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-26	269	326	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G090700.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038317	1e-165	BT038317.1 Zea mays full-length cDNA clone ZM_BFb0227D23 mRNA, complete cds.
GenBank	EU954590	1e-165	EU954590.1 Zea mays clone 1472551 hypothetical protein mRNA, complete cds.
GenBank	JX469978	1e-165	JX469978.1 Zea mays subsp. mays clone UT3338 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012698680.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	0.0	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	K3YSE7	0.0	K3YSE7_SETIT; Uncharacterized protein
STRING	Si017191m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	9e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G090700.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]