PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G090100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | SBP | ||||||||
Protein Properties | Length: 557aa MW: 60035.6 Da PI: 10.023 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.6e-41 | 260 | 336 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+hkvCe+hskap+v+v+gle+rfCqqCsrfh l+ fD++krsCrrrL++hn+rrrk+q+ Sevir.1G090100.1.p 260 CQVEGCKIDLSSAKDYHRKHKVCEAHSKAPKVVVAGLERRFCQQCSRFHGLDVFDQKKRSCRRRLNDHNARRRKPQP 336 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-32 | 253 | 321 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.761 | 257 | 334 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 259 | 339 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-31 | 260 | 333 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MDAKRGAGHT ILRVLDRLLG VLSFLSARFR LSFSVFWFLR PWFPLSFLPH CPCQLPQLQC 60 KNFQQDTDSS FAIIRKGARR TAGIFGSGMG SFGMDWSQKG SVLWDWENLP PIGANGNLVP 120 QAEAKFAGVE VTRHGSVHSS CGTFSSSSEM GYGSSKSSIS ASIDSSPKAG NNMELNFAPA 180 RVPDKYIGKN TDLRTSPSSV IAVSSGEPVL SLKLGKRTYF EDACGGQSVK SSPSDSSIVT 240 PPAAPVKKAK AAQNVQNSYC QVEGCKIDLS SAKDYHRKHK VCEAHSKAPK VVVAGLERRF 300 CQQCSRFHGL DVFDQKKRSC RRRLNDHNAR RRKPQPEAIS FGSSRLPAMF YGTDPRQQTS 360 LLFGQAPYGQ MRSRASSSWD NPGGAFKFAE TKASWLKPAG ATGLDALHLS SQQVWNNIMP 420 HGAHQDFAGF MAFKGTSAKV LNQGVEASVV ASDSNGNPDL QRALSLLSNN SADAGNNQPT 480 TQLHPGLSAL ASTSNAVMQQ ASPLGLWQDG TALDLHARFQ ALDPMGNGSA IAAAHEPQLP 540 RPPSYNGSSS HYDLTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 260 | 333 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 315 | 332 | KKRSCRRRLNDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G090100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951926.1 | 0.0 | squamosa promoter-binding-like protein 3 isoform X1 | ||||
Swissprot | A2X0Q6 | 1e-170 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 1e-170 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | A0A368PJE8 | 0.0 | A0A368PJE8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa03225.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3697 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-41 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G090100.1.p |