PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G087600.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HB-PHD | ||||||||
Protein Properties | Length: 543aa MW: 60227.6 Da PI: 4.5719 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.8 | 8.9e-09 | 263 | 306 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e+L + F++n p ++ +e L+++l+++ +++ WF+N R Sevir.1G087600.4.p 263 PTAVEVLRKSFAENELPPRDVKENLSRELDISFEKIDKWFKNTR 306 67899*************************************99 PP | |||||||
2 | PHD | 33.8 | 7.8e-12 | 7 | 61 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ s ++++++C+g Ck+++H kCl+++le++ p + wlC+ C + Sevir.1G087600.4.p 7 MCSTCKSheSFPNNKIIFCEGaCKRTYHEKCLEPPLEKSALPTSshGWLCKFCLC 61 6******65555*******966*****************9999999*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 1.0E-11 | 5 | 62 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.238 | 5 | 62 | IPR019787 | Zinc finger, PHD-finger |
SuperFamily | SSF57903 | 1.85E-12 | 6 | 65 | IPR011011 | Zinc finger, FYVE/PHD-type |
Pfam | PF00628 | 2.0E-9 | 7 | 61 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 7 | 60 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 8 | 59 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 2.0E-10 | 248 | 306 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.677 | 252 | 312 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-9 | 254 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-8 | 254 | 316 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.09E-9 | 256 | 316 | No hit | No description |
Pfam | PF00046 | 2.9E-6 | 263 | 306 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MEWAKIMCST CKSHESFPNN KIIFCEGACK RTYHEKCLEP PLEKSALPTS SHGWLCKFCL 60 CKVKILEAIN AHLGTNFTVK CHFEDVFKEA TEQIDSEDAL DEDWLSEYSG DEDYDPEENE 120 ASSSCMNSGE EIMSDDSNGS GSPLYSPNDD IPDFISADFN DVEGLCHANL DLGIDSGEDD 180 GAQILTYQRP RRDVDYRRLN EEMFGKIIEN EEQSEDEDWG HDRRKKRRTR AASVQDNSVD 240 GFSNVISDEK TEKKGRKLFR IPPTAVEVLR KSFAENELPP RDVKENLSRE LDISFEKIDK 300 WFKNTRCAAL RDRKAEGNSH NPAPSKSSRS KGKAGISGKT ERNDRIATLS NNLRTNEEKA 360 DISGMVDSGD NSCFVPLSEI INVPTRLQRN LEKRKMESTS SPLRLHNKGA SSPTGQVKES 420 TSPTSKSCLQ TDLSHPTNNE VSAEEQAASQ MDTDACPEDE AASQMDTGAR AEEQAAPLVD 480 TGASDYQPFL DVIDEMCGLE CRLQRLKKNM LSLGAEGCAN GGSDMKNQAV VLVPSAELKE 540 KA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 229 | RKKRRTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G087600.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814275.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2T7F1U1 | 0.0 | A0A2T7F1U1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00383.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 4e-59 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G087600.4.p |