PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G087600.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-PHD
Protein Properties Length: 543aa    MW: 60227.6 Da    PI: 4.5719
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G087600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.88.9e-09263306952
                         HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         ++ +e+L + F++n  p ++ +e L+++l+++ +++  WF+N R
  Sevir.1G087600.4.p 263 PTAVEVLRKSFAENELPPRDVKENLSRELDISFEKIDKWFKNTR 306
                         67899*************************************99 PP

2PHD33.87.8e-12761150
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                 PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50
                        +C+ C++  s  ++++++C+g Ck+++H kCl+++le++  p +   wlC+ C +
  Sevir.1G087600.4.p  7 MCSTCKSheSFPNNKIIFCEGaCKRTYHEKCLEPPLEKSALPTSshGWLCKFCLC 61
                        6******65555*******966*****************9999999*******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.0E-11562IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.238562IPR019787Zinc finger, PHD-finger
SuperFamilySSF579031.85E-12665IPR011011Zinc finger, FYVE/PHD-type
PfamPF006282.0E-9761IPR019787Zinc finger, PHD-finger
SMARTSM002491.1E-7760IPR001965Zinc finger, PHD-type
PROSITE patternPS013590859IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.0E-10248306IPR009057Homeodomain-like
PROSITE profilePS5007111.677252312IPR001356Homeobox domain
SuperFamilySSF466891.63E-9254321IPR009057Homeodomain-like
SMARTSM003894.7E-8254316IPR001356Homeobox domain
CDDcd000864.09E-9256316No hitNo description
PfamPF000462.9E-6263306IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEWAKIMCST CKSHESFPNN KIIFCEGACK RTYHEKCLEP PLEKSALPTS SHGWLCKFCL  60
CKVKILEAIN AHLGTNFTVK CHFEDVFKEA TEQIDSEDAL DEDWLSEYSG DEDYDPEENE  120
ASSSCMNSGE EIMSDDSNGS GSPLYSPNDD IPDFISADFN DVEGLCHANL DLGIDSGEDD  180
GAQILTYQRP RRDVDYRRLN EEMFGKIIEN EEQSEDEDWG HDRRKKRRTR AASVQDNSVD  240
GFSNVISDEK TEKKGRKLFR IPPTAVEVLR KSFAENELPP RDVKENLSRE LDISFEKIDK  300
WFKNTRCAAL RDRKAEGNSH NPAPSKSSRS KGKAGISGKT ERNDRIATLS NNLRTNEEKA  360
DISGMVDSGD NSCFVPLSEI INVPTRLQRN LEKRKMESTS SPLRLHNKGA SSPTGQVKES  420
TSPTSKSCLQ TDLSHPTNNE VSAEEQAASQ MDTDACPEDE AASQMDTGAR AEEQAAPLVD  480
TGASDYQPFL DVIDEMCGLE CRLQRLKKNM LSLGAEGCAN GGSDMKNQAV VLVPSAELKE  540
KA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223229RKKRRTR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G087600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814275.10.0pathogenesis-related homeodomain protein
TrEMBLA0A2T7F1U10.0A0A2T7F1U1_9POAL; Uncharacterized protein
STRINGPavir.Ab00383.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.24e-59pathogenesis related homeodomain protein A