PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G087600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HB-PHD | ||||||||
Protein Properties | Length: 529aa MW: 60019.2 Da PI: 8.2629 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.8 | 8.6e-09 | 453 | 496 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +e+L + F++n p ++ +e L+++l+++ +++ WF+N R Sevir.1G087600.3.p 453 PTAVEVLRKSFAENELPPRDVKENLSRELDISFEKIDKWFKNTR 496 67899*************************************99 PP | |||||||
2 | PHD | 33.8 | 7.5e-12 | 197 | 251 | 1 | 50 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ s ++++++C+g Ck+++H kCl+++le++ p + wlC+ C + Sevir.1G087600.3.p 197 MCSTCKSheSFPNNKIIFCEGaCKRTYHEKCLEPPLEKSALPTSshGWLCKFCLC 251 6******65555*******966*****************9999999*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 8.43E-13 | 190 | 255 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 3.0E-11 | 194 | 252 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.22 | 195 | 252 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 2.0E-9 | 197 | 251 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 197 | 250 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 198 | 249 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 438 | 496 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.677 | 442 | 502 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-8 | 444 | 506 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-9 | 444 | 511 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.74E-8 | 446 | 506 | No hit | No description |
Pfam | PF00046 | 2.8E-6 | 453 | 496 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MRSSENKTVC SNSGRSSKRR KETSSELVPV SNRPSRRNAS RQCKHDSPLK RSPRKVRNAT 60 LAKSIKNKYH CSPLKRRRGS DSVAGKVVTG LVARRRKKRK RQNTDEATRL ERRARYFLIK 120 IKLEQNLLDA YSGDGWNGQS REKIKPEKEL QRAKKQIIKC KIAIRDVIRQ LDVCNSTGSF 180 DDPVMPPAEC TDPEHIMCST CKSHESFPNN KIIFCEGACK RTYHEKCLEP PLEKSALPTS 240 SHGWLCKFCL CKVKILEAIN AHLGTNFTVK CHFEDVFKEA TEQIDSEDAL DEDWLSEYSG 300 DEDYDPEENE ASSSCMNSGE EIMSDDSNGS GSPLYSPNDD IPDFISADFN DVEGLCHANL 360 DLGIDSGEDD GAQILTYQRP RRDVDYRRLN EEMFGKIIEN EEQSEDEDWG HDRRKKRRTR 420 AASVQDNSVD GFSNVISDEK TEKKGRKLFR IPPTAVEVLR KSFAENELPP RDVKENLSRE 480 LDISFEKIDK WFKNTRCAAL RDRKAEGNSH NPAPSKSSRS KGKAGISD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 97 | RRRGSDSVAGKVVTGLVARRRKK |
2 | 93 | 98 | RRRKKR |
3 | 93 | 99 | RRRKKRK |
4 | 94 | 100 | RRKKRKR |
5 | 95 | 100 | RKKRKR |
6 | 413 | 419 | RKKRRTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G087600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU948954 | 0.0 | EU948954.1 Zea mays clone 391409 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814275.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2T7F1U1 | 0.0 | A0A2T7F1U1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00383.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 1e-87 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G087600.3.p |