PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G079900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 209aa    MW: 20972.2 Da    PI: 6.9095
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G079900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-182171256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +gr++AeIrdp     r + ++lg+f++ae Aa+a++aa+++++g+
  Sevir.1G079900.1.p 21 KYRGVRRRP-SGRYAAEIRDP---A-RkTPIWLGTFDSAEAAARAYDAAARNIRGA 71
                        8********.7*********8...2.35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-312184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-292180IPR001471AP2/ERF domain
CDDcd000181.99E-142177No hitNo description
PfamPF008476.3E-122170IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212179IPR016177DNA-binding domain
PROSITE profilePS5103221.9442178IPR001471AP2/ERF domain
PRINTSPR003678.9E-82233IPR001471AP2/ERF domain
PRINTSPR003678.9E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRRSRLPPVP APAGHGGAEV KYRGVRRRPS GRYAAEIRDP ARKTPIWLGT FDSAEAAARA  60
YDAAARNIRG AAARTNFPSS AASPAVAPVA VVPPPPQHPV TAASAAATSS HSSTVESWSG  120
GGGSGAPGAV TAGFLRGAAP AAEEDCRSYC GSSSSVLCED GASGAGAGDE AAAPPRCSPL  180
PFDLNVADPE AAAAADEMDW RCDTLLHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1821781472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G079900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951832.11e-143ethylene-responsive transcription factor 3-like
TrEMBLA0A368PHY41e-142A0A368PHY4_SETIT; Uncharacterized protein
STRINGGRMZM2G322672_P019e-69(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.13e-13ethylene response factor 8