PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G055400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21259.8 Da PI: 6.8994 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1e-19 | 15 | 65 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +gr++AeIrdp k++r++lg+f++ae+Aa+a++aa++ l+g Sevir.1G055400.1.p 15 SRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 65 789*******.**********83...36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.23E-18 | 15 | 73 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-22 | 15 | 74 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-13 | 15 | 65 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-36 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.433 | 16 | 73 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-32 | 16 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRRGGAEAAD FDVESRFRGV RKRPWGRYAA EIRDPAKKAR VWLGTFDSAE DAARAYDAAA 60 RMLRGPKAKT NFPLPAAAHH HHMPAAYTPY TTPGVSTPPV AMPACSSLSS TVESFNGARQ 120 RPVLPPRPPP PPIPDDDCRS DCGSSASVVD DDCTDAAASP SCRLPLPFDL NLPAGSGCGA 180 GVGWYGDEED EIRLTALRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-21 | 17 | 74 | 6 | 64 | ATERF1 |
3gcc_A | 3e-21 | 17 | 74 | 6 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G055400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728206 | 1e-84 | KJ728206.1 Zea mays clone pUT6482 AP2-EREBP transcription factor (EREB138) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951621.1 | 1e-142 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9SXS8 | 2e-30 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A368PHF4 | 1e-141 | A0A368PHF4_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ab00660.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5123 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 7e-23 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G055400.1.p |