PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G050400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 211aa MW: 22092.3 Da PI: 9.6716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 12 | 37 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Sevir.1G050400.3.p 12 KTRLCNKYKTADGCKWGDKCHFAHGE 37 9***********************96 PP | |||||||
2 | zf-CCCH | 35.4 | 1.8e-11 | 176 | 201 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +fa+ G C +GdrC+FaHg+ Sevir.1G050400.3.p 176 FKTKMCENFAK-GSCTFGDRCHFAHGE 201 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-14 | 7 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-9 | 9 | 41 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 10 | 38 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.2 | 10 | 37 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 12 | 37 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.67E-14 | 71 | 151 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 7.0E-10 | 80 | 150 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.865 | 81 | 145 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 6.1E-15 | 81 | 149 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.8E-11 | 83 | 145 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.73E-14 | 83 | 145 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-17 | 174 | 207 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-9 | 175 | 206 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.981 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-7 | 175 | 201 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-8 | 176 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MMMDGPPTPT MKTRLCNKYK TADGCKWGDK CHFAHGEREL GKPMLMDSST HFPMGPGPTG 60 HFAPPPMVNP GMATPASFGA SATAKISVDA SLAGRIIGRG GVNTKQISRV TGAKLAIRDH 120 ESDTKLKNIE LEGTFDQIKN ASAMVGELIV NISGSAPPPA KNPAGGPHRG GSGSNFKTKM 180 CENFAKGSCT FGDRCHFAHG ENELRKPAAA * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G050400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951586.1 | 1e-153 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-112 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A368PI11 | 1e-152 | A0A368PI11_SETIT; Uncharacterized protein | ||||
TrEMBL | A0A368PJ40 | 1e-153 | A0A368PJ40_SETIT; Uncharacterized protein | ||||
STRING | Si019853m | 1e-152 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-53 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G050400.3.p |