PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G050400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 211aa    MW: 22092.3 Da    PI: 9.6716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G050400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-081237227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+lC+ +     Ck Gd+C+FaHg+
  Sevir.1G050400.2.p 12 KTRLCNKYKTADGCKWGDKCHFAHGE 37
                        9***********************96 PP
2zf-CCCH35.41.8e-11176201127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+ C +fa+ G C +GdrC+FaHg+
  Sevir.1G050400.2.p 176 FKTKMCENFAK-GSCTFGDRCHFAHGE 201
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-14742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9941IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.311038IPR000571Zinc finger, CCCH-type
SMARTSM003560.21037IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-51237IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.67E-1471151IPR004088K Homology domain, type 1
SMARTSM003227.0E-1080150IPR004087K Homology domain
PROSITE profilePS5008414.86581145IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.1E-1581149IPR004088K Homology domain, type 1
PfamPF000132.8E-1183145IPR004088K Homology domain, type 1
CDDcd001051.73E-1483145No hitNo description
Gene3DG3DSA:4.10.1000.104.1E-17174207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-9175206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981175202IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-7175201IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8176201IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MMMDGPPTPT MKTRLCNKYK TADGCKWGDK CHFAHGEREL GKPMLMDSST HFPMGPGPTG  60
HFAPPPMVNP GMATPASFGA SATAKISVDA SLAGRIIGRG GVNTKQISRV TGAKLAIRDH  120
ESDTKLKNIE LEGTFDQIKN ASAMVGELIV NISGSAPPPA KNPAGGPHRG GSGSNFKTKM  180
CENFAKGSCT FGDRCHFAHG ENELRKPAAA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G050400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951586.11e-153zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-112C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A368PI111e-152A0A368PI11_SETIT; Uncharacterized protein
TrEMBLA0A368PJ401e-153A0A368PJ40_SETIT; Uncharacterized protein
STRINGSi019853m1e-152(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-53C3H family protein