PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G050400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 295aa    MW: 30726.9 Da    PI: 9.7624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-0896121227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ +     Ck Gd+C+FaHg+
  Sevir.1G050400.1.p  96 KTRLCNKYKTADGCKWGDKCHFAHGE 121
                         9***********************96 PP
2zf-CCCH34.82.8e-11260285127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+ C +fa+ G C +GdrC+FaHg+
  Sevir.1G050400.1.p 260 FKTKMCENFAK-GSCTFGDRCHFAHGE 285
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9063462IPR000571Zinc finger, CCCH-type
SMARTSM003560.723461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-73659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-1491126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-893125IPR000571Zinc finger, CCCH-type
SMARTSM003560.294121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3194122IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-596121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.34E-14155235IPR004088K Homology domain, type 1
SMARTSM003227.0E-10164234IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.3E-14165233IPR004088K Homology domain, type 1
PROSITE profilePS5008414.865165229IPR004088K Homology domain, type 1
CDDcd001055.41E-14167229No hitNo description
PfamPF000135.1E-11167229IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.106.8E-17258291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9259290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981259286IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-7259285IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8260285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEDVRKRGTA DGANGASAGG KRARESESFQ TGVGSKTKPC TKFFSTSGCP FGEGCHFLHC  60
FPGGYQAVSK ITNLGGPAVT PPGRMMMDGP PTPTMKTRLC NKYKTADGCK WGDKCHFAHG  120
ERELGKPMLM DSSTHFPMGP GPTGHFAPPP MVNPGMATPA SFGASATAKI SVDASLAGRI  180
IGRGGVNTKQ ISRVTGAKLA IRDHESDTKL KNIELEGTFD QIKNASAMVG ELIVNISGSA  240
PPPAKNPAGG PHRGGSGSNF KTKMCENFAK GSCTFGDRCH FAHGENELRK PAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G050400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951586.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-162C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A368PI110.0A0A368PI11_SETIT; Uncharacterized protein
STRINGSi019853m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-74C3H family protein