PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G048500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 407aa    MW: 42808.2 Da    PI: 5.8433
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G048500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.85.7e-91324064374
                GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevs 88 
                         l+l+cA  ++ gd   a+++  ++   a p+gd+  Rla++f++ALa+r+ +  ++     +  ++++         + +++a+ +++++ 
  Sevir.1G048500.1.p  32 LVLACAGLLHRGDVDGARRAAGEVLSAADPRGDAADRLAHHFARALARRVDGGDDKAGGEEEDATSAPAGaaptvpGAPSATAYLAYNQIA 122
                         789***********************************************994444432222222221113455568888899999***** PP

                GRAS  89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                         P+l+f+hltaNq Il+a++    +r+Hi+D+d+ +G+QWp+Llqa+a+R     gpp++RiTg g+    +++ l +tg+rL+ fA++l++
  Sevir.1G048500.1.p 123 PFLRFAHLTANQVILDAAAATgaRRLHIVDLDAAHGVQWPPLLQAFADRVdpdLGPPEVRITGAGP----DHDVLLRTGDRLRAFASSLNL 209
                         ****************9876655**************************966667***********....********************* PP

                GRAS 175 pfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerfle 259
                         pf+f++l    +++l+      L+++p+E+laVn+vl lh+l   ++++     ++L+ vks++P vv+++e+ea+ ++    ++ +r++ 
  Sevir.1G048500.1.p 210 PFHFHPLplpCTTQLAGDPAAVLELHPDETLAVNCVLFLHKLG-GEGEI----AAFLSWVKSMNPAVVTLAEREASVGRDcpeDLHRRVAA 295
                         *******776666777778899********************8.34444....66*******************9997755569******* PP

                GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                         a++yysa+fd+lea++p+ s +r +vEre+lg+ei +vva   a    r++ +e+W ++ ++aG++p pls +a   a+lllr ++ s+gy
  Sevir.1G048500.1.p 296 AMDYYSAVFDALEATVPPGSADRLSVEREVLGQEIDEVVAPGRAG--GRTRGFESWAAAARAAGLSPRPLSAFA---ARLLLRLHYpSEGY 381
                         ****************************************99998..9***********************987...79************ PP

                GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
                           ee +g+ +lgW++rpL+svS+W+
  Sevir.1G048500.1.p 382 VAEEARGACFLGWQTRPLMSVSSWQ 406
                         ************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.8833388IPR005202Transcription factor GRAS
PfamPF035142.0E-8832406IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MLGAPRHDGD AAARARHQEQ DAAAAPSSPR GLVLACAGLL HRGDVDGARR AAGEVLSAAD  60
PRGDAADRLA HHFARALARR VDGGDDKAGG EEEDATSAPA GAAPTVPGAP SATAYLAYNQ  120
IAPFLRFAHL TANQVILDAA AATGARRLHI VDLDAAHGVQ WPPLLQAFAD RVDPDLGPPE  180
VRITGAGPDH DVLLRTGDRL RAFASSLNLP FHFHPLPLPC TTQLAGDPAA VLELHPDETL  240
AVNCVLFLHK LGGEGEIAAF LSWVKSMNPA VVTLAEREAS VGRDCPEDLH RRVAAAMDYY  300
SAVFDALEAT VPPGSADRLS VEREVLGQEI DEVVAPGRAG GRTRGFESWA AAARAAGLSP  360
RPLSAFAARL LLRLHYPSEG YVAEEARGAC FLGWQTRPLM SVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-505540629375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G048500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
SwissprotQ84MM91e-141MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A368PHR60.0A0A368PHR6_SETIT; Uncharacterized protein
STRINGSi019936m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.16e-65GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]