PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G027900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 251aa    MW: 26344.8 Da    PI: 11.1534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G027900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.6e-085079336
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36
                        y+GVr +  +g+Wv+eIr+p++   + r++lg++
  Sevir.1G027900.1.p 50 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTW 79
                        9****998.**********843...6******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.9454979IPR001471AP2/ERF domain
SMARTSM003804.5E-1449107IPR001471AP2/ERF domain
PRINTSPR003678.4E-65061IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1650102IPR001471AP2/ERF domain
CDDcd000181.13E-1450102No hitNo description
SuperFamilySSF541713.27E-1050101IPR016177DNA-binding domain
PRINTSPR003678.4E-67288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPDTEVSSPA SSGGTSSSPP QSPNEAASKR SASGGGKRRP RDGGEKHLSY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTWR RARTTPPALV VNGPAAVLNF PEMAAALPRP TSAAPRDVQA  120
AAARAAAMEP SSRLAAAGSA AVAAPAAGQL QDKELDAIVE LPRLDDDDDA EFVAFGDTSF  180
VFHVAARRGA IRCGPTMTPA TFRRRLRRTT TCAGSMATPA GRNRLVPCGT CSCSCCLQPA  240
GRFANQSTSV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G027900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269402e-49KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660287.17e-88LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 3-like
TrEMBLA0A3L6QFN67e-64A0A3L6QFN6_PANMI; Uncharacterized protein
STRINGSi018222m2e-62(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-27ERF family protein