PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G026200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 279aa    MW: 29053.4 Da    PI: 6.1411
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G026200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1056.1e-33171072101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++
  Sevir.1G026200.1.p  17 FVAKTYRMVDDPSTDGVIAWGRDNNSFVVADPFVFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTH 98 
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll +i r++
  Sevir.1G026200.1.p  99 LLPRIVRRS 107
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-3313106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.1E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-5213106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MASGGGAGAD AAGVAPFVAK TYRMVDDPST DGVIAWGRDN NSFVVADPFV FSQTLLPAHF  60
KHSNFSSFVR QLNTYGFRKV DPDRWEFAHV SFLRGQTHLL PRIVRRSGGG GGKRKDDGCG  120
GGGDAGAVDE DAVAMELVRL KREQRAIEDQ VAAMWRRVQE TERRPKQMLA FLVKVAGDPQ  180
VLRRLVSSSG ASGAGGASGG VGFASGPEED CAGGEVAKRA RLLLDGGDPV YGGGSSDAAA  240
AAEFGVFYSA GADDVGFGGE AGGYLQPPPY VFPVNSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23510617129Heat shock factor protein 1
5d5v_B3e-23510617129Heat shock factor protein 1
5d5v_D3e-23510617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G026200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9766691e-179EU976669.1 Zea mays clone 986698 heat shock factor protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951380.11e-149heat stress transcription factor C-2a-like
SwissprotQ6EUG49e-99HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A368PG401e-148A0A368PG40_SETIT; Uncharacterized protein
STRINGGRMZM2G105348_P011e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-57heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]