PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G024800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 420aa    MW: 42016.1 Da    PI: 10.2444
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G024800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221389.3e-43551664119
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 
                          r+p++ ErEnn+rRERrRR ++++iy+ LRa+Gny lp  +DnneVlkA creAGwvve+DGttyr+gs+p+       g+ a +sp ss
  Sevir.1G024800.1.p  55 ARTPSQVERENNRRRERRRRLVSSRIYTALRAEGNYTLPRNCDNNEVLKAVCREAGWVVEPDGTTYRRGSRPPrGVLGGFGATAPVSPASS 145
                         799**********************************************************************333344444444566666 PP

              DUF822  94 lqsslkssalaspvesysaspksssf 119
                         +       + + p++sy  ++ sss+
  Sevir.1G024800.1.p 146 TPP-----TPTPPTASYGLTLGSSSS 166
                         552.....233445555555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-4055168IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MMNGGGGMVA AGAGGAGGSG GGGGGDRDRG KGIVFGNGYG SARGRAKGRA RNAPARTPSQ  60
VERENNRRRE RRRRLVSSRI YTALRAEGNY TLPRNCDNNE VLKAVCREAG WVVEPDGTTY  120
RRGSRPPRGV LGGFGATAPV SPASSTPPTP TPPTASYGLT LGSSSSSSSY LTLGGGSGGI  180
FYGAAGGGGS SSGLPAWFQR LSQAGGQASS STTASAPVTP QNASPPQLTL ARWAAEDNAA  240
AAAAAAAAAN LQPRWAAGAG PSPYAPQAQQ QPLTMPPSPV GGGSGAVDPV LLLAGIQISA  300
AANNNNNYRR PPRPYTYSPL GTPGASSFAA GASSSRMGTP GPVQSSGGPW APAPAPAPAP  360
APAPAPAARG GGDGDGDVEM EPREFSFAWD GEVSREDYTD EDGLELTLGN SKTRADRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-1976133392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-1976133392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-1976133392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-1976133392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G024800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819084.12e-86protein BZR1 homolog 4-like
TrEMBLA0A368PGE70.0A0A368PGE7_SETIT; Uncharacterized protein
STRINGSi019582m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1866659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.62e-22BES1 family protein