PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G015200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 355aa MW: 39421.7 Da PI: 7.5183

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G015200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.6	1e-52	10	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+ Sevir.1G015200.1.p 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 99 69**************************.9***********943455444445**************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++ + +g++vgl+ktLvfy+grap+g+ktdW+mheyrl Sevir.1G015200.1.p 100 DKAIFLSnGGRKVGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 99868899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-59	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	59.477	10	162	IPR003441	NAC domain
Pfam	PF02365	1.9E-27	11	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MHPSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLSNGGR KVGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL DDDNVEVPIT EDGWVVCRVF KKKSIQRGFD QQQGMAAAVV 180 HDEELHSFQH SPTGGATTPV DQKHGLHQLM HGGFFPAFDP SMHLPHLTNA EVPTLGTPAF 240 ISGTPAAVAV NPLGMGSSPH NLVKLTTSSC GTAGDMLLNG GERFGAVAAA DWSILDKLLA 300 SHQNLDQLFH GKFGGTPVGV SQHYQQRQQQ LMEMSATSLQ RLPLHYLGCE TADL*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MHPSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLSNGGR KVGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL DDDNVEVPIT EDGWVVCRVF KKKSIQRGFD QQQGMAAAVV  180
HDEELHSFQH SPTGGATTPV DQKHGLHQLM HGGFFPAFDP SMHLPHLTNA EVPTLGTPAF  240
ISGTPAAVAV NPLGMGSSPH NLVKLTTSSC GTAGDMLLNG GERFGAVAAA DWSILDKLLA  300
SHQNLDQLFH GKFGGTPVGV SQHYQQRQQQ LMEMSATSLQ RLPLHYLGCE TADL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	8	164	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	8	164	18	170	NAC domain-containing protein 19
3swm_B	1e-50	8	164	18	170	NAC domain-containing protein 19
3swm_C	1e-50	8	164	18	170	NAC domain-containing protein 19
3swm_D	1e-50	8	164	18	170	NAC domain-containing protein 19
3swp_A	1e-50	8	164	18	170	NAC domain-containing protein 19
3swp_B	1e-50	8	164	18	170	NAC domain-containing protein 19
3swp_C	1e-50	8	164	18	170	NAC domain-containing protein 19
3swp_D	1e-50	8	164	18	170	NAC domain-containing protein 19
4dul_A	1e-50	8	164	15	167	NAC domain-containing protein 19
4dul_B	1e-50	8	164	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G015200.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953045	1e-155	EU953045.1 Zea mays clone 1377565 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012702713.1	0.0	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-107	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	K3YTP5	0.0	K3YTP5_SETIT; Uncharacterized protein
STRING	Si017641m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	3e-88	NAC family protein

Link Out ? help Back to Top
Phytozome	Sevir.1G015200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]