PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G007300.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 653aa MW: 73262.2 Da PI: 7.8248 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.8e-13 | 75 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + rW++eE ell ++v+++G+++W+ I+ ++ R + c srw Sevir.1G007300.5.p 75 KCRWSPEENELLTQLVHKHGTKNWHNISCAIP-DRNAHACLSRWKY 119 569*****************************.***********85 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.4e-13 | 127 | 169 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W + ++++ gRt + +k++w+ Sevir.1G007300.5.p 127 KEAWSQQEELRLIRAHQIYGNK-WCKMVKHFP-GRTNNALKEHWR 169 579*******************.*********.***********7 PP | |||||||
3 | Myb_DNA-binding | 40.8 | 5e-13 | 335 | 378 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +grW +eE ++l + v+++G ++W tIa+ ++ R + qc+ rw Sevir.1G007300.5.p 335 KGRWLAEENKILTKMVTKHGLKNWQTIASAIP-SRNAQQCRIRWT 378 79******************************.***********5 PP | |||||||
4 | Myb_DNA-binding | 36.3 | 1.3e-11 | 388 | 429 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eE+++l++a++ +G+ W + ++++ gRt +k++w+ Sevir.1G007300.5.p 388 EDWSEEEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 429 67*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.177 | 70 | 121 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-25 | 73 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 74 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-18 | 77 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.36E-10 | 77 | 121 | No hit | No description |
Pfam | PF13921 | 5.5E-14 | 78 | 138 | No hit | No description |
PROSITE profile | PS51294 | 20.608 | 122 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 126 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.69E-9 | 129 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 129 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.365 | 330 | 381 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-23 | 334 | 428 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-12 | 334 | 383 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 336 | 388 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-9 | 337 | 381 | No hit | No description |
Pfam | PF13921 | 5.6E-15 | 338 | 398 | No hit | No description |
PROSITE profile | PS51294 | 18.766 | 382 | 436 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-11 | 386 | 434 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-16 | 389 | 436 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-8 | 390 | 429 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 653 aa Download sequence Send to blast |
MEQSSDGMPR QRRDFSSTNH LSNSNAVAEG MTDISHETSK HWQDMESENT EVPPQKKNVH 60 GFNECSSLKN LERTKCRWSP EENELLTQLV HKHGTKNWHN ISCAIPDRNA HACLSRWKYV 120 LDPAINKEAW SQQEELRLIR AHQIYGNKWC KMVKHFPGRT NNALKEHWRG SMKRKLDSYL 180 ASGLLEQVPD LHENLSVLQS SQSDSPKDSK VSSDRSQFSS ILSTRSKLKQ EIRELSENAD 240 TSVGESSDFI YAKALDTHSA KVSESIITKP QQCARARKKL DSVSTPVKLK SDLPPETVKC 300 RQEMESGKTA EGPPCKKNGY CFKEGSSLKN SETTKGRWLA EENKILTKMV TKHGLKNWQT 360 IASAIPSRNA QQCRIRWTRS LDPAINKEDW SEEEELKLIR AHQIYGSQWL KMVKHFPGRT 420 NHALKEHWRG RMKGKLNYYL ASGRLEEITD LKEDISVPES SQSDIPKDSQ GSSERNRPPS 480 SLPPRPKSKS DLSELDENAD TSEEESSDCI YPKGLDAHSA KVSEKIMAKS KQRARARKKL 540 DFLSTPVELK VCTAAASCQR PPPKMEQTTP ASDNSSPSDV CQGIPQNAAS EPVDVVIPTA 600 ASNHPNDVHS LATPDPCSLE IHEADASDLL DMSYCDGLMI DSPLYLHGSS FI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 78 | 437 | 4 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G007300.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951228.1 | 0.0 | snRNA-activating protein complex subunit 4 isoform X2 | ||||
TrEMBL | A0A368PGH9 | 0.0 | A0A368PGH9_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa02683.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-37 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G007300.5.p |