PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G007200.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 36878.6 Da PI: 7.0277 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 32 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eE e+l++ v + +++W++Iar ++ gR++kqc++rw yl Sevir.1G007200.5.p 32 RGAWSQEENEILIQMVDAHSSKDWSSIARAVP-GRSRKQCRDRWTHYL 78 89******************************.***********9886 PP | |||||||
2 | Myb_DNA-binding | 40.7 | 5.6e-13 | 85 | 125 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W+++E+ l++a+k +G++ W a+ ++ gRt+k +k++w Sevir.1G007200.5.p 85 MPWSEQEEIDLIRAHKIHGNK-WCELAKFFP-GRTGKAIKNYW 125 68*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.335 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-28 | 30 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 31 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-22 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.01E-14 | 34 | 78 | No hit | No description |
Pfam | PF13921 | 5.6E-17 | 35 | 95 | No hit | No description |
SMART | SM00717 | 6.4E-12 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 86 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-11 | 86 | 125 | No hit | No description |
PROSITE profile | PS51294 | 14.541 | 86 | 133 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MNSYCSMMSP YKLLNISTMK NRKGQTVSFK RRGAWSQEEN EILIQMVDAH SSKDWSSIAR 60 AVPGRSRKQC RDRWTHYLDP AVNQMPWSEQ EEIDLIRAHK IHGNKWCELA KFFPGRTGKA 120 IKNYWTGAMK KKIKSNLGSG SPEQLSPCPN DSLIPVGRDS TATSSQDSSN NIPISSADLP 180 VRLKSKHGLT EACRNACTLK EKGPDSIHDE GSIPHSVNVS QMVDGRTVGS SLHILTEEKL 240 VSPLSSVDEK VSCVAANSPK PLKEEESTNF LEIPPALSFQ SSNVHSDAIC SSADPESRQL 300 HLASIADLLD MSYCESLMVI APDSTNDEDF KLGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 32 | 135 | 7 | 110 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G007200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683586.1 | 0.0 | transcription factor MYB3R-1-like isoform X2 | ||||
TrEMBL | A0A368PFE6 | 0.0 | A0A368PFE6_SETIT; Uncharacterized protein | ||||
STRING | Si017987m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 3e-40 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G007200.5.p |