PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G007200.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 31596.5 Da PI: 6.3442 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.6 | 7.7e-10 | 3 | 33 | 17 | 48 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +++W++Iar ++ gR++kqc++rw yl Sevir.1G007200.4.p 3 DAHSSKDWSSIARAVP-GRSRKQCRDRWTHYL 33 5678889*********.***********9886 PP | |||||||
2 | Myb_DNA-binding | 41 | 4.5e-13 | 40 | 80 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W+++E+ l++a+k +G++ W a+ ++ gRt+k +k++w Sevir.1G007200.4.p 40 MPWSEQEEIDLIRAHKIHGNK-WCELAKFFP-GRTGKAIKNYW 80 68*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.16E-7 | 1 | 33 | No hit | No description |
PROSITE profile | PS51294 | 11.422 | 1 | 33 | IPR017930 | Myb domain |
SMART | SM00717 | 3 | 1 | 35 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-8 | 2 | 33 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-15 | 2 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.49E-24 | 13 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.247 | 34 | 88 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-12 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-12 | 40 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-19 | 40 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-12 | 41 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MVDAHSSKDW SSIARAVPGR SRKQCRDRWT HYLDPAVNQM PWSEQEEIDL IRAHKIHGNK 60 WCELAKFFPG RTGKAIKNYW TGAMKKKIKS NLGSGSPEQL SPCPNDSLIP VGRDSTATSS 120 QDSSNNIPIS SADLPVRLKS KHGLTEACRN ACTLKEKGPD SIHDEGSIPH SVNVSQMVDG 180 RTVGSSLHIL TEEKLVSPLS SVDEKVSCVA ANSPKPLKEE ESTNFLEIPP ALSFQSSNVH 240 SDAICSSADP ESRQLHLASI ADLLDMSYCE SLMVIAPDST NDEDFKLGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 1 | 88 | 21 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G007200.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683586.1 | 0.0 | transcription factor MYB3R-1-like isoform X2 | ||||
Refseq | XP_022683605.1 | 0.0 | transcription factor MYB3R-1-like isoform X3 | ||||
TrEMBL | A0A368PFE6 | 0.0 | A0A368PFE6_SETIT; Uncharacterized protein | ||||
STRING | Si017987m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-34 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G007200.4.p |