PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400069253 | ||||||||
Common Name | LOC107057963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22070.1 Da PI: 10.3285 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1.1e-16 | 102 | 150 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +ykGVr++k +g+WvAe++dp++ + r++lg+f taeeAa + +a+ +++ PGSC0003DMP400069253 102 KYKGVRQRK-WGKWVAEVYDPRT---KGRIWLGTFNTAEEAALVYNKAAIAIK 150 8*******9.*******999854...48********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.78E-30 | 102 | 157 | No hit | No description |
SMART | SM00380 | 3.3E-30 | 102 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-19 | 102 | 158 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.402 | 102 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-26 | 102 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-11 | 102 | 150 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MTSKNKYHEK KVIRKPSKND ATKNSTVQVE GSSSIQPNPA RVYLWGVDLM NLSNHEDKGK 60 VKEEKSKGRD KTRQKKIFSE NENVKAISIE NSKEKPQENV EKYKGVRQRK WGKWVAEVYD 120 PRTKGRIWLG TFNTAEEAAL VYNKAAIAIK GVNAVTNIIK PAPTDLPLAE ITSINPSSKE 180 IDFMNLPSSS LDGDRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-16 | 103 | 158 | 6 | 62 | ATERF1 |
3gcc_A | 4e-16 | 103 | 158 | 6 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400069253 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158623.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | M1E0Y0 | 1e-140 | M1E0Y0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097578 | 1e-140 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 9e-26 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400069253 |
Entrez Gene | 107057963 |
Publications ? help Back to Top | |||
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