PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400069166 | ||||||||
Common Name | LOC102580032 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27237.7 Da PI: 5.0078 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.8 | 5.9e-13 | 16 | 50 | 8 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42 r+ + kR + ++KKAeE S+LCd++va+ ifs+ PGSC0003DMP400069166 16 VRNSLLDKRATSLFKKAEEFSILCDIDVAIFIFSP 50 4555678**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.4E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.339 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-15 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-12 | 14 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDRKRLRNTR NDSENVRNSL LDKRATSLFK KAEEFSILCD IDVAIFIFSP GEIQPIVWKS 60 TDLAKEVLVR YSKFTEEERI KKLMIHERYL SKKVDEKEEK FEKIEKMNEE KEMEILFNQL 120 VEGKNIAELT ARDIQGLLKL FNTKIAKLYE RKEKINQQHQ SSQPQTSRSN IKFPNENATP 180 LPNSMDDLIN DMCFVETMST NHNYFDLGDG NNIDSAPIDG DDISAGDNGH SKDLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400069166 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343472.1 | 1e-173 | PREDICTED: MADS-box protein AGL24-like | ||||
TrEMBL | M1E0R3 | 1e-172 | M1E0R3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097491 | 1e-173 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 4e-16 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400069166 |
Entrez Gene | 102580032 |
Publications ? help Back to Top | |||
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