PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400069047
Common NameLOC102583938
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 276aa    MW: 32506.4 Da    PI: 4.965
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400069047genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.7e-2151293128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           +G+rFhPtd el+ +yLk+  +g+    +++ i+ +diy    Pw++   ++ eek  yf ++ +k++++ kr +r+ ++g+W+ +  +
  PGSC0003DMP400069047   5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANFEEKFRYFITPLKKQKTEYKRFSRICAKGTWQGQTGE 91 
                           7************.9*******9985444556*******87368***6.556677888**************************77666 PP

                   NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           + + ++ +  +vg k+ L f   +++ g++ +W+m ey++
  PGSC0003DMP400069047  92 HLIRRNrTAPVVGFKRNLKFK--TSECGQNNTWLMVEYHV 129
                           77776535667*********8..789999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.1683153IPR003441NAC domain
PfamPF023651.4E-155129IPR003441NAC domain
SuperFamilySSF1019415.75E-225153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANFEEKFR  60
YFITPLKKQK TEYKRFSRIC AKGTWQGQTG EHLIRRNRTA PVVGFKRNLK FKTSECGQNN  120
TWLMVEYHVA NSFFKENNHI LKEDFVVCRI KKKMGKEKNE DHVMEAQDGD VEGIIDPMLL  180
EPNHNNDYST REDQVRVCDE QDAVEATTTE FDVPNNTYEA TTMEKRERTL EVEEGHRVDD  240
IRSHEFQEEM YRAFEDIPVD IPDDWLQNSS ILQDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400069047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345191.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLM1E0H10.0M1E0H1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000973720.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-15NAC domain containing protein 52
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]