PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400068969
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 416aa    MW: 47390.1 Da    PI: 5.7241
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400068969genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.92e-1793143455
               G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           ++Wt +LH++F ea +qL G+ +  Pk+ile+m+v+gLt+ +v S LQ+ R+
  PGSC0003DMP400068969  93 IEWTVDLHAKFKEATQQL-GEGRCLPKEILEIMNVPGLTRMQVVSYLQRCRI 143
                           78****************.9****************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.68E-1290147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1790146IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-1492144IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MREGLDPKGD HVKYVDNIGN ENIVRNIEQS EEKSMSINNE EQSNNIHETE NNVVSRRTNN  60
LRSKRSRKGK KVIDKGERQS TAIYKDLNQK DCIEWTVDLH AKFKEATQQL GEGRCLPKEI  120
LEIMNVPGLT RMQVVSYLQR CRINKRKPSK EKEYIRHRSS CGSQQRIERS SHRIFGRIPD  180
LQTNVPNQTH GDPEFPPVNT NNIYASLIEQ QLYHPQLQVQ QHYLSSFLSG QNNDGGRLQQ  240
QYGPLFGSHG PIIGSNNSNF YMTFNSGDHH DFNLNHQTQN DYNLDLNQPY VTTNSTSAIM  300
TYMNGGNAII NGSGEAITNF QQYIGEENIF VPSNFIATSN TSGNEGSDLN EWENCDAYLN  360
FHNMDDLYHN IGVSSSILPN ENGNEYDQVY SIDQGSTYLQ SYKVDVLKTD ETIFD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400068969
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168360.10.0PREDICTED: two-component response regulator ARR14-like
TrEMBLM1E0B70.0M1E0B7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000972940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-16response regulator 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]