PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400068776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24837.2 Da PI: 10.4946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.8e-16 | 87 | 137 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g ++AeIrdp k +r +lg++ t+e+Aa a+++a+ k++g PGSC0003DMP400068776 87 RYIGVRRRQ-WGTFAAEIRDP---DrKGARLWLGNYETPEDAALAYDQAAFKIRG 137 699***887.**********8...3245*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 87 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.562 | 87 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-25 | 87 | 144 | No hit | No description |
Pfam | PF00847 | 2.7E-10 | 87 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 87 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-29 | 87 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-9 | 127 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MNINTEFSLS DFDFLESVKQ HLLNDFDFSE YFSPMNLSNV ELPNSPNSSL GSSPSIESHE 60 KSESEVEIIK GPMVVTREKH ASGDWRRYIG VRRRQWGTFA AEIRDPDRKG ARLWLGNYET 120 PEDAALAYDQ AAFKIRGSKA RVNFSHLIGS NMPEPARLIV RHRTRSPKPS AFSFTSLENG 180 TRKRKIDLIN SIAKAKAKAN LFVIIRRGVK TERVGLKII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 88 | 144 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 86 | 151 | 4 | 69 | ATERF1 |
3gcc_A | 2e-22 | 86 | 151 | 4 | 69 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400068776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769870.1 | 1e-110 | ethylene-responsive transcription factor 2-like | ||||
TrEMBL | M1DZX1 | 1e-159 | M1DZX1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097101 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 3e-36 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400068776 |
Publications ? help Back to Top | |||
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