PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400068756 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 102aa MW: 11671.3 Da PI: 8.6979 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.6 | 2.8e-12 | 2 | 46 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ie+++ r v+fskR+++++ A+ + ++aev v++fs+ gk PGSC0003DMP400068756 2 KFIESERDRAVSFSKRKKTLFQDAKKFATRTGAEVGVMLFSPGGK 46 79****************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-17 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-8 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.423 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-16 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MKFIESERDR AVSFSKRKKT LFQDAKKFAT RTGAEVGVML FSPGGKPCSY GSTSIEEIIE 60 KFLKVKLEDH QREYAEGKSN YFEALEDLHK ELQTCNEKEK K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400068756 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ896310 | 1e-168 | HQ896310.1 Solanum tuberosum clone RH201H22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158947.1 | 1e-58 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DZV6 | 3e-67 | M1DZV6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400097081 | 4e-68 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 1e-17 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400068756 |
Publications ? help Back to Top | |||
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