PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400068365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 21012.5 Da PI: 4.6831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.7 | 1.2e-15 | 9 | 95 | 41 | 128 |
NAM 41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + ePw++ + +++ yf ++++k++++ kr +r++ +g Wk +gk kev+++kg+l+g k+L + g +++k + +W+m ey l PGSC0003DMP400068365 9 ENEPWQILEG--TNSYTRYFITPQKKQNPKWKRVSRTVGKGAWKPQGKGKEVFDNKGRLMGYVKSLKYTYGkSDNKNANGEWLMTEYYL 95 469***9633..234477**************************************************866366777899*******87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.215 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-19 | 10 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-6 | 11 | 94 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MEVVNLYAEN EPWQILEGTN SYTRYFITPQ KKQNPKWKRV SRTVGKGAWK PQGKGKEVFD 60 NKGRLMGYVK SLKYTYGKSD NKNANGEWLM TEYYLNDGYL EAREIKNKGY VICKIKKKRK 120 PNDDNENGVS DEIMNDIEKL IDSSLQLNDD INVEEDDVGD EVLAILDKED DGDPNVEWTS 180 IS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 115 | 120 | KKKRKP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400068365 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975519 | 1e-177 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348968.1 | 1e-129 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | M1DZ11 | 1e-128 | M1DZ11_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096690 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79580.3 | 5e-12 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400068365 |
Publications ? help Back to Top | |||
---|---|---|---|
|