PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400068353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 246aa MW: 28389.9 Da PI: 7.0229 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.6 | 2.1e-11 | 114 | 164 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 l+Wt+eL ++ e+v++LG +kA Pk++le m v++Lt e + L kYR+ PGSC0003DMP400068353 114 NLKWTSELEKKLDEVVRELG--DKAGPKNVLESMCVQDLTKECLTYRLKKYRS 164 589****************4..89****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 110 | 168 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-8 | 113 | 165 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKLKDVWKHV KWHNNKANEK SQHYKANQVY VMDNTSCSKK MQDKKGKSIA NCSEMYQDQA 60 VDSLIEKDEA KRSKRMRSTK EEAQVKRSGP SEKEEDHFLL SKISTERPEK KRRNLKWTSE 120 LEKKLDEVVR ELGDKAGPKN VLESMCVQDL TKECLTYRLK KYRSQKRQAP VGQLVTSNEE 180 HQSNVLNSSN FSADVNELFQ GADIPQPPEV PSVDTLPSSN DYSLNECDDW INEFLELDDF 240 ELKLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400068353 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 1e-122 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164912.1 | 1e-146 | PREDICTED: two-component response regulator ORR22-like | ||||
TrEMBL | M1DZ03 | 1e-180 | M1DZ03_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096678 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4899 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 9e-09 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400068353 |
Publications ? help Back to Top | |||
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